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bioengineer.org > hidden-fungus-rewires-rice-root-chemistry-to-summon-nitrogen-fixing-bacteria

Hidden Fungus Rewires Rice Root Chemistry to Summon Nitrogen-Fixing Bacteria

57+ min ago   (774+ words) Researchers found that an endophytic fungus alters rice root exudates, enriching p-hydroxyphenylacetic acid to recruit nitrogen-fixing Enterobacter bacteria that boost rice biomass and nitrogen accumulation....


bioengineer.org > resolvi-cleans-up-noisy-spatial-transcriptomics-data-after-segmentation-goes-wrong

ResolVI cleans up noisy spatial transcriptomics data after segmentation goes wrong

57+ min ago   (77+ words) A new probabilistic deep learning model called ResolVI corrects misassigned RNA molecules and batch effects in spatial transcriptomics data, sharpening cell-type identification across brain, liver cancer and colitis datasets. Subject of Research: A probabilistic deep learning model that corrects segmentation…...


bioengineer.org > minimalist-phage-ptero-reveals-the-bare-essentials-of-bacterial-attack

Minimalist Phage Ptero Reveals the Bare Essentials of Bacterial Attack

57+ min ago   (544+ words) Researchers in Australia have characterized phage Ptero and a family of thirteen minimalist bacteriophages whose stripped-down infection machinery reveals the core elements phages use to recognize and kill diverse Klebsiella hosts....


bioengineer.org > shrubby-cinquefoil-mitochondrial-genomes-reveal-hidden-dna-traffic-between-cell-compartments

Shrubby Cinquefoil Mitochondrial Genomes Reveal Hidden DNA Traffic Between Cell Compartments

1+ hour, 15+ min ago   (58+ words) The first complete mitochondrial genomes of Dasiphora fruticosa and D. glabra reveal stable gene cores, lineage-specific repeats, and extensive DNA transfer between cellular compartments. Subject of Research: Comparative mitochondrial genomics of the alpine shrubs Dasiphora fruticosa and D. glabra News Source: Gavin…...


bioengineer.org > ai-reads-protein-shapes-to-unmask-bacterial-weapons

AI Reads Protein Shapes to Unmask Bacterial Weapons

2+ hour, 31+ min ago   (557+ words) A new multimodal deep learning framework called GeoEPred combines protein language model semantics with predicted 3D structures to more accurately identify the virulence effector proteins secreted by Gram-negative bacteria....


bioengineer.org > living-near-livestock-farms-linked-to-drug-resistant-genes-in-household-dust

Living Near Livestock Farms Linked to Drug-Resistant Genes in Household Dust

2+ hour, 40+ min ago   (770+ words) A large metagenomic study of Iowa homes finds that bedroom dust contains more antimicrobial resistance genes when residences sit closer to intensive livestock operations....


bioengineer.org > wild-rice-gene-recruits-nitrogen-fixing-bacteria-to-boost-crop-efficiency

Wild Rice Gene Recruits Nitrogen-Fixing Bacteria to Boost Crop Efficiency

2+ hour, 40+ min ago   (644+ words) Researchers have shown that a single receptor-like kinase gene inherited from wild rice can restore nitrogen-fixing root bacteria lost during domestication, boosting nitrogen-use efficiency and yield traits in cultivated rice....


bioengineer.org > ancient-jumping-genes-help-explain-how-dna-variants-shape-the-human-cortex

Ancient Jumping Genes Help Explain How DNA Variants Shape the Human Cortex

3+ hour, 16+ min ago   (777+ words) A massively parallel reporter assay of 9,092 cortical-structure-associated variants reveals that Alu retrotransposons, Wnt signaling and transcription factor expression jointly determine how noncoding DNA shapes the human cortex....


bioengineer.org > treatment-pulses-reshape-nutrient-landscapes-and-decide-whether-resistant-mutants-escape

Treatment pulses reshape nutrient landscapes and decide whether resistant mutants escape

3+ hour, 3+ min ago   (600+ words) A yeast-based therapy-mimicry assay paired with a digital twin reveals that intermittent treatment pulses control resistance escape by reshaping spatial nutrient gradients, defining a narrow therapeutic sweet spot....


bioengineer.org > new-matrix-method-captures-selection-at-genes-with-many-alleles

New Matrix Method Captures Selection at Genes With Many Alleles

3+ hour, 3+ min ago   (685+ words) Researchers have developed a matrix-based framework that models and estimates selection at multiallelic loci, capturing regimes such as heterozygote advantage directly from allele frequency time-series data....